species:   Rhsol
pid:       PID0630
parent:    Rhi-milR-13
paralog:   
locus:     KB317790.1:1869-1980
matures:   ['ACUGAGACUUGCAUUGAUUG', 'AUCGAUGCAGGUCUCAGUUG']
srr:       SRR1994874
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram KB317790.1:1869-1980

4 out of bounds
58 alignments
41 proper strand
39 stranded perfect matches

                  *************************            *************************                                
CAAUCAAUGUGUUUACAAUGUAACUGAGACUUGCAUUGAUUGGUUGGAUGCCAAACCAAUCGAUGCAGGUCUCAGUUGCAUUGUAAACACAUCAAUUGGUUUGGCAUCCAAC
((((..(((((((((((((((((((((((((((((((((((((((((...)).)))))))))))))))))))))))))))))))))))))))..))))..((((...)))).
----------------------ACUGAGACUUGCAUUGAUUG---------------------------------------------------------------------- l=20 a=0 c
----------------------------------------------------------AUCGAUGCAGGUCUCAGUUG---------------------------------- l=20 a=0 c*
--------------------UAACUGAGACUUGCAUUGAUUGG--------------------------------------------------------------------- l=23 a=18 ma
---------------------------------------------------------AAUCGAUGCAGGUCUCAGUUGCA-------------------------------- l=23 a=0 ma*

-----------UUUACAAUGUAACUGAGACUUGC------------------------------------------------------------------------------ l=23 a=2 
------------------UGUAACUGAGACUUGCAUUG-------------------------------------------------------------------------- l=20 a=1 
--------------------UAACUGAGACUUGCAUUGA------------------------------------------------------------------------- l=19 a=1 
--------------------UAACUGAGACUUGCAUUGAUUG---------------------------------------------------------------------- l=22 a=2 
--------------------UAACUGAGACUUGCAUUGAUUGG--------------------------------------------------------------------- l=23 a=18 (ma)
--------------------UAACUGAGACUUGCAUUGAUUGGU-------------------------------------------------------------------- l=24 a=4 
--------------------UAACUGAGACUUGCAUUGAUUGGa-------------------------------------------------------------------- l=24 a=1 
---------------------AACUGAGACUUGCAUUGAUUGGU-------------------------------------------------------------------- l=23 a=1 
-----------------------CUGAGACUUGCAUUGAUUGGUUG------------------------------------------------------------------ l=23 a=1 
-----------------------CUGAGACUUGCAUUGAUUGGUUGG----------------------------------------------------------------- l=24 a=1 
------------------------UGAGACUUGCAUUGAUUGGUUGG----------------------------------------------------------------- l=23 a=2 
------------------------UGAGACUUGCAUUGAUUGGUUGGA---------------------------------------------------------------- l=24 a=3 
--------------------------AGACUUGCAUUGAUUGGUUGGAUG-------------------------------------------------------------- l=24 a=1 
------------------------------UUGCAUUGAUUGGUUGGAU--------------------------------------------------------------- l=19 a=1 
--------------------------------------------UGGAUGCCAAACCAAUCGAUGCAGG------------------------------------------- l=25 a=1 
---------------------------------------------------------------------------------UGUAAACACAUCcAUUGGUUUGG-------- l=23 a=1 

mb-01111
ax-1011011
ku-00
ss-111110111100
fn-101
